Qlife Quantitative Biology winter school « Quantitative Seascape Ecology of Marine Plankton » 2027
Download here tentative program
Master in Life Science, ENS
BIO-Q10-Qlife Winter School | Quantitative Seascape Ecology of Marine Plankton
Year and Semester : M2 | S2
Where : Biology department, ENS
Duration : 1 week (March 15 - 19, 2027)
Credits : 3 ECTS
Maximum class size : 25 students
Coordination
Patrick Charnay, Biology Department, ENS
Chairman of the scientific committee : Chris Bowler, Biology Department, ENS
Keywords
Tara expeditions | metagenomics | quantitative ecology | plankton | oceanic environment | evolutionary biology | biogeochemistry | climate change
Course prerequisites
Basic experience in file manipulation under Unix/Linux and coding ability in Python or R. Attendance is competitive (25 participants) and open to M2 and PhD students, postdocs, engineers and junior scientists with backgrounds in life science, geoscience, physics, chemistry, computer science and mathematics. Knowledge or experience in the fields of the school is recommended.
Course objectives and description
Aims and themes : the workshop will cover a range of quantitative studies in ecology made possible by the extensive Tara Oceans datasets, which comprise DNA sequence and organism imaging resources from all domains of plankton life including viruses, as well as rich metadata to explore their environmental context.
Participants will learn to use these unprecedented resources for exploring contributions of plankton to ecological, evolutionary and biogeochemical processes, aiming to provide the predictive power needed to track the impact of climate change on life in the oceans.
Organisation : Each day will include two introductory lectures in the morning, followed by digital practicals run by experts in the afternoon (every day, the student has to choose between two practicals).
The evenings will include inspirational seminars from prestigious scientists and poster presentations by the students.
Assessment of M2 students
After the course, the student who requires a mark writes reports on two of the digital workshops, which will be assessed by the coordinators of the practicals.
Course material
The course will include introductory lectures, a series of hands-on digital workshops run by experts, inspirational seminars from prestigious scientists and poster sessions run by the students.
Application Deadline
January 10th, 2027
Registration fees
200 € (fees cover lunches from Monday to Friday and some dinners).
Application procedure
Register through this link
In addition, provide a CV, a motivation letter and a supporting letter from a supervisor as a single pdf file with “Qlife Marine Plankton Winter School 2027_LASTNAME” as subject header to
qlife.events chez psl.eu
Speakers and Instructors
Olivier AUMONT, Paris
Sakina AYATA, Paris
Laurent BOPP, Paris
Chris BOWLER, Paris
Stafano CAMPAGNOLA, Palma
Lucia CAMPESE, Naples
Quentin CARRADECn Evry
Samuel CHAFFRON, Nantes
Colomban DE VARGAS, Roscoff
Roy EL HOURANY, Lille
Murat EREN, Oldenburg
Christian ETHÉ, Paris
Damien EVEILLARD, Nantes
Paul FREMONT, Evry
Jean-Olivier IRISSON, Villefranche-sur-mer
Olivier JAILLON, Evry
Sophia LAMBERT, Roscoff
Magali LESCOT, Marseille
Hélène MORLON, Paris
Laurina OMS, Paris
Lucas PAOLI, Lausanne
Benoît PEREZ-LAMARQUE, Toulouse
Renaud PERSON, Marseille
Taylor PRIEST, Zürich
Hugues ROEST CROLLIUS, Paris
Boris SAUTEREY, Paris
Enrico SER-GIACOMI, Palma
Shini SUNAGAWA, Zürich
Flora VINCENT, Heidelberg
Meike VOGT, Zürich
Suggested readings in relation with the module content
Karsenti, E., Acinas, S. G., Bork, P., Bowler, C., De Vargas, C., Raes, J., Sullivan, M., Arendt, D., Benzoni, F., Claverie, J. M., Follows, M., Gorsky, G., Hingamp, P., Iudicone, D, Jaillon, O., Kandels-Lewis, S., Krzic, U., Not, F., Ogata, H., Pesant, S., Reynaud, E. G., Sardet, C., Sieracki, M. E., Speich, S., Velayoudon, D., Weissenbach, J., Wincker, P. ; the Tara Oceans Consortium. A holistic approach to marine eco-systems biology. PLoS Biol. 9 : e1001177 (2011).
Sunagawa, S., Acinas, S. G., Bork, P., Bowler, C., Tara Oceans Coordinators, Eveillard, D., Gorsky, G., Guidi, L., Iudicone, D., Karsenti, E., Lombard, F., Ogata, H., Pesant, S., Sullivan, M. B., Wincker, P. and de Vargas, C. Tara Oceans : towards global ocean ecosystems biology. Nat. Rev. Microbiol. 18 : 428-445 (2020).
Pierella Karlusich, J. J., Lombard, F., Irisson, J.-O., Bowler, C. and Foster, R. A. Coupling imaging and omics in plankton surveys : State-of-the-art, challenges, and future directions. Front. Mar. Sci. 9 : 878803. doi : 10.3389/fmars.2022.878803 (2022).
Delmont, T. O., Gaia, M., Hinsinger, D. D., Fremont, P., Vanni, C., Fernandez Guerra, A., Eren, A. M., Kourlaiev, A., d’Agata, L., Clayssen, Q., Villar, E., Labadie, K., Cruaud, C., Poulain, J., Da Silva, C., Wessner, M., Noel, B., Aury, J. M., Tara Oceans Coordinators, de Vargas, C., Bowler, C., Karsenti, E., Pelletier, E., Wincker, P. and Jaillon, O. Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean. Cell Genomics 2 : 100123 (2022).